Insertion junction: CLIP2.033701_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.033701
Chromosome:chromosome 13
Location:1967516
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g576500 (1 of 1) PTHR35698//PTHR35698:SF1 - FAMILY NOT NAMED // DNA-BINDING PROTEIN RHL1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAGAATAAAGCTTCACCGCGATAGAGGTGTCCCAGTTGCCCATGCAGTT
Internal bar code:GAGCACCATTCGGTTATGATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:799
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGAGGAAAACCCAGAAGA
Suggested primer 2:AGGTGCTGGGCTTAGGAAAC