Insertion junction: CLIP2.033812_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.033812
Chromosome:chromosome 8
Location:4074935
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g383000 (1 of 1) IPR000104//IPR001471//IPR016177//IPR031112 - Antifreeze protein, type I // AP2/ERF domain // DNA-binding domain // AP2-like ethylene-responsive transcription factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGGGCGCGCAGCAGTCATCGTGGTCACCACCAGCACCGGCACCGGCAC
Internal bar code:TCTCAATTCTCTCGCTAAGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1315
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTTGATGAAGACGCGCTG
Suggested primer 2:TCTTGAGGATGGCAGCGATC