Insertion junction: CLIP2.033984_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.033984
Chromosome:chromosome 10
Location:1839579
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g430950 RAD54B,SRH18 (1 of 1) K10875 - DNA repair and recombination protein RAD54 and RAD54-like protein (RAD54L, RAD54); SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGCACCGCACCTGCTCGGGGGTGGCGTCCGGCTCGCGGCCTGCCAGGA
Internal bar code:GAGTGTTTGGGATTTATTACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1295
LEAP-Seq percent confirming:56.25
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:ACCGTGAAAGTGATGTCGCT
Suggested primer 2:GGTGGTTGCACAGCTTCTTG