Insertion junction: CLIP2.033985_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.033985
Chromosome:chromosome 6
Location:7122370
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g297904 (1 of 1) K10863 - aprataxin [EC:3.-.-.-] (APTX) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGTAACGTAGGATCCGGACGCCTCTGTGTGCCGAGAGGATTGCTGAGAT
Internal bar code:TTTAGAGTAGGCAGGCTGTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3273
LEAP-Seq percent confirming:93.617
LEAP-Seq n confirming:88
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:94

Suggested primers for confirmation by PCR

Suggested primer 1:GGATCGGCCACTAGTGCTAC
Suggested primer 2:AAGGTGCTTTTGCCTGCATG