Insertion junction: CLIP2.034009_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.034009
Chromosome:chromosome 16
Location:551620
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g692500 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGAACGGGCCTTGCAGCTCCTGCGCGCACAATTACATGAAGACGTGTGC
Internal bar code:GGGTCGATCTATAATCGTTGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1129
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCTCTCAGTCTCACCCTC
Suggested primer 2:GCTCGACTGCATACGGTACA