Insertion junction: CLIP2.034226_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.034226
Chromosome:chromosome 6
Location:2680761
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g270600 CDS
lncRNA_TCONS_00027197 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCCTGCCGTTTGGCGGGAGGCTGCTGCTGGTGTTGCGGTTGCTGGTACC
Internal bar code:TCGCCGGGTAGAGGGAGCGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1935
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGGACTTCTGCGACAACA
Suggested primer 2:AATTCCCAAGTCCGCACCAT