Insertion junction: CLIP2.034282_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.034282
Chromosome:chromosome 5
Location:3321296
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g232500 FXL8 (1 of 2) IPR000014//IPR011990 - PAS domain // Tetratricopeptide-like helical domain; FixL-like PAS domain protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACACACACACACACACACACACACACACAGTCACACACACACACACA
Internal bar code:GAATGTTAAGCGTCGTAACGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:677
LEAP-Seq percent confirming:72.7273
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGTGCAATAGGGGGA
Suggested primer 2:CTTCGGTGTGCGTTTCGTTT