Insertion junction: CLIP2.034366_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.034366
Chromosome:chromosome 9
Location:893321
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403350 (1 of 1) IPR000357//IPR016024//IPR021133 - HEAT repeat // Armadillo-type fold // HEAT, type 2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGTCACGTTTGACCACAGCGCTAATCAACGCGCCGCCGCGGTGGCAGGC
Internal bar code:AGCGGGGGCTGTCTGCGTGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:551
LEAP-Seq percent confirming:59.0909
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGGCCGACAGGTTGTTAG
Suggested primer 2:TAGAGGAGGTGTCGGAGAGC