Insertion junction: CLIP2.034475_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.034475
Chromosome:chromosome 3
Location:5212110
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g181750 intron
lncRNA_TCONS_00234913 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTATCTTCTACATGCCTGTACAGCCATGGCGGACGCTCCTTCCAGCGACT
Internal bar code:GGCCAGGACGGTGTTTAGCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3431
LEAP-Seq percent confirming:73.2558
LEAP-Seq n confirming:63
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTTGCTCCGAGTACTTGT
Suggested primer 2:CAAAATCACACGCCCAGCAA