Insertion junction: CLIP2.034559_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.034559
Chromosome:chromosome 6
Location:7453465
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g300600 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGCAACCCTCCACCTGTCACATCACGCGTGACGAAGTAGAAGGCATGG
Internal bar code:TTCATTGTCTTTCGGCCTATGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1843
LEAP-Seq percent confirming:82.4074
LEAP-Seq n confirming:89
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:108

Suggested primers for confirmation by PCR

Suggested primer 1:GGAATCGCATGCGGAGAGTA
Suggested primer 2:GTTGGCGTTGATCCGTATGC