Insertion junction: CLIP2.034624_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.034624
Chromosome:chromosome 17
Location:3914148
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g727850 (1 of 781) IPR000104 - Antifreeze protein, type I intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAAATTAGCGTCTCAGCAGGGTCCGGTGCTTCCACGTGCAAACCGCCAG
Internal bar code:TATTGTGACCATCGTCACTGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1618
LEAP-Seq percent confirming:55.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGATGACCCACAGCAGAA
Suggested primer 2:TGAAGTGGCAGTAGCTGTCG