Insertion junction: CLIP2.034704_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.034704
Chromosome:chromosome 9
Location:2676994
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g391900 TRXH1,TRXH,TRXh1,Chh1,TRX5 (1 of 9) K03671 - thioredoxin 1 (trxA); Thioredoxin h1, cytosolic intron
Cre09.g801021 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACAGCAAAAGGAGTTGGTCAGGAACATGTGTTTAGATCGGCCGGACCA
Internal bar code:TGGAGAAATGCATTGATCTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:1341
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:GGTCACTGTCACTGTCCCTG
Suggested primer 2:CAACCCTTTCCTCGCTTCCT