Insertion junction: CLIP2.034708_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.034708
Chromosome:chromosome 5
Location:3058973
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800572 (1 of 34) 2.4.2.41 - Xylogalacturonan beta-1,3-xylosyltransferase / Xylogalacturonan xylosyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGAGAGTAACCCGCTCGTGTCTCTGCTTTGGAACTGTTGACAACAACA
Internal bar code:AAGTCATCGTTTTCGTTAAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2446
LEAP-Seq percent confirming:97.619
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCTGAGGCCAGGGATGTG
Suggested primer 2:ATCTACAATCCCGCTCCCCT