Insertion junction: CLIP2.034753_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.034753
Chromosome:chromosome 13
Location:2452883
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579598 SSS3B,SSS3 (1 of 2) PTHR12526//PTHR12526:SF341 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED; Soluble starch synthase III intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTGGGTGTGTAGGGGTTTTCACCATTCCCAGCAGGGGGTTGTTGGTTT
Internal bar code:TTTTATTGCAGCAAATGACTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1451
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:CACGGGGTAAAGAACACGGA
Suggested primer 2:TGGACACTGTGTACGACGTG