Insertion junction: CLIP2.034800_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.034800
Chromosome:chromosome 3
Location:3488427
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g167200 (1 of 1) PTHR23097//PTHR23097:SF107 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGGCGCTGCCCAGCCCATCCCGTGGCGTGCCACGGCTTCGCCAATGCC
Internal bar code:ACCTATCCTGGGAATGCAGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2789
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CATGGCTGGTGCATCTCAGA
Suggested primer 2:GCTCCGAGGACAGGATGATG