Insertion junction: CLIP2.034801_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.034801
Chromosome:chromosome 8
Location:2890382
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g374250 SAG1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Plus agglutinin protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGGCTGCCGCGACCGCCGCCGCCAACGCGTCCGCCGCGGCGGCGGAGC
Internal bar code:GTGACCAGGACACCATCAGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1157
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GACGGAAGGAGTCTCGGTTC
Suggested primer 2:TTCAGAAGGAGCAGCTGGTG