Insertion junction: CLIP2.034917_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.034917
Chromosome:chromosome 7
Location:2032200
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g325700 SRH15 SNF2-related DNA/RNA helicase; (1 of 1) PTHR10799//PTHR10799:SF577 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // PROTEIN TAF-3, ISOFORM A intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTGCACATACACACACCGGCTGCCCCTGCCGAGCCGCCGCGGTTTCACC
Internal bar code:ACGGTATGGGTCGGGATCCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:123
LEAP-Seq percent confirming:60.8696
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCCGTACATCCTACCGCC
Suggested primer 2:TGATGTAGCGCCAGTCGATC