Insertion junction: CLIP2.034994_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.034994
Chromosome:chromosome 11
Location:517291
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467597 (1 of 1) IPR000104//IPR003439//IPR003593//IPR013525//IPR013581//IPR027417 - Antifreeze protein, type I // ABC transporter-like // AAA+ ATPase domain // ABC-2 type transporter // Plant PDR ABC transporter associated // P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCTGCAGGCGTGGAGCCTCTCCCCGCCGACTACAACCCCGCGACCTG
Internal bar code:CGTGAAACGCTTATATCCGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:254
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCAGGCACTCCTACAATT
Suggested primer 2:TCCGCACTTTCCTCCAACTC