Insertion junction: CLIP2.035003_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.035003
Chromosome:chromosome 16
Location:4801288
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g687600 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCAGACGTCGGCGGAAGGGCCGCAGCCGCAGGCGCCGGCAGGGCAGC
Internal bar code:AGAGCATAACGGGGTCATCTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:539
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTCAAATGCGAACCCCAA
Suggested primer 2:CATCTTGCCCCCTTCACCAT