Insertion junction: CLIP2.035024_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.035024
Chromosome:chromosome 9
Location:85921
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g386300 CSB34TNP22,TNP22 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon); {"Probable transposon-derived protein of Chlamydomonas-Specific family B intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAATTGCCGGTGGGTGGGTGGGCCGCTGGGTTTATGCCTGGCTTTAGC
Internal bar code:CACACTTCCAGATTGGCCTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1348
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTAACCCGCAGCTAACAA
Suggested primer 2:GGGCCGATTCCATATGAGCA