Insertion junction: CLIP2.035048_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.035048
Chromosome:chromosome 2
Location:8145502
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre02.g144002 PUS20 (1 of 2) 5.4.99.24 - 23S rRNA pseudouridine(955/2504/2580) synthase; RNA pseudouridine synthase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAGCACGTAGGGCTCCAGCTGGGGCGGCGGCTGCGAGTGTGAGAGGGC
Internal bar code:CAAAGCGGTATAACCTATCCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:212
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:CCATTCCTCGTGTTCCCACA
Suggested primer 2:GAAGGTCCTGTGCGTGTGTA