Insertion junction: CLIP2.035160_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035160
Chromosome:chromosome 11
Location:3276774
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g476376 FAP221,Pcdp1,RPC82 Flagellar Associated Protein 221; (1 of 1) PTHR23053//PTHR23053:SF21 - DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTAGGTTAAAGGCAACCGCAACAGCTGGCCCCTTACCGCATGAGACGG
Internal bar code:CACGACGTACCGCCGTCAAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:163
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:ACGAGTGTGTGTGTGTGTGT
Suggested primer 2:GATGCGAGAGGGATTGGGAG