Insertion junction: CLIP2.035175_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.035175
Chromosome:chromosome 14
Location:1810054
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g619613 (1 of 1) PF04855 - SNF5 / SMARCB1 / INI1 (SNF5) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGTGACCGTGTGCGTGTGCGTGTTAATGTGGGCGGGGAGGGGGCGTTG
Internal bar code:AGAAGACCTCAACCATAACTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:99
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTCCCCCACCTAATGTA
Suggested primer 2:AACCATGACCACTGACGACC