Insertion junction: CLIP2.035397_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035397
Chromosome:chromosome 3
Location:7427896
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g206000 (1 of 1) PTHR16301//PTHR16301:SF2 - IMPACT-RELATED // PROTEIN IMPACT HOMOLOG CDS
Cre03.g206203 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGATCCGTAAATTGACTCCAGTGCGCACAGTTCCTCTTCCTGCTCCTCG
Internal bar code:GAAGGCAGTGGGCTCTCAAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:3441
LEAP-Seq percent confirming:86.3636
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCAGGTCGACATCCCTTT
Suggested primer 2:AGATACCGTATGCAGTGGCG