Insertion junction: CLIP2.035402_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035402
Chromosome:chromosome 9
Location:2970500
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393321 CSR12 (1 of 6) 2.8.2.33 - N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase / GalNAc4S-6ST; Carbohydrate sulfotransferase-related 12 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGGTTAAGACAAAAGAGACACACGGTCTCACCCGCTCACCACGATGGA
Internal bar code:TAGAAGCGTGGGAAGTTTAAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:891
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCCAATTGCCGTAACCT
Suggested primer 2:AGAGGGAGGGGTTAGCTCTG