Insertion junction: CLIP2.035446_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.035446
Chromosome:chromosome 1
Location:2349394
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g013250 (1 of 2) IPR006357//IPR023214 - HAD-superfamily hydrolase, subfamily IIA // HAD-like domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACCGAGCGTCGTCGACCCCGGTAGTCATACTTACCCGCGAAAAGCCTG
Internal bar code:GATATGGTTCACGTACTGGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2511
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTCGGCTTAGTTTGGGGT
Suggested primer 2:GCAACAAATGAAGGCGGTGT