Insertion junction: CLIP2.035462_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.035462
Chromosome:chromosome 6
Location:7451487
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g300600 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCCCCGTCGCCGGCGGCGGCGGCCTCGACGCCGGCCCTGCGCGTGAAG
Internal bar code:ATCCGTGGAAGTTGTGTCATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2110
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GGGAGCTATCAGCCCATGTC
Suggested primer 2:GTTGTTGTTGTAGCCCAGCG