Insertion junction: CLIP2.035522_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.035522
Chromosome:chromosome 3
Location:1547509
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g152100 XRN2 5' to 3' exoribonuclease; (1 of 1) IPR004859//IPR027073//IPR029060 - Putative 5-3 exonuclease // 5'-3' exoribonuclease // PIN domain-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGGCGTGACTTGTGGCTTGTGTGTATGAGAGCTTTGGGCTTAGGCTTA
Internal bar code:CCATTGGATAAGTTTAATCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1513
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TATCAGGAAGCACGGCAAGG
Suggested primer 2:ATGAGGCTTGAGACAAGGGC