Insertion junction: CLIP2.035605_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.035605
Chromosome:chromosome 5
Location:273595
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800512 (1 of 1) IPR011010//IPR013762//IPR023109 - DNA breaking-rejoining enzyme, catalytic core // Integrase-like, catalytic domain // Integrase/recombinase, N-terminal CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCCGCGCGGGCGCCGCTGGTGGCCGCCACGCGCATGTGCCACGCCAGA
Internal bar code:AGTCAGTCATTATAATGGTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:908
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGTCCAGTTCGCGGAGTC
Suggested primer 2:CGTCTCTGTCTCCGATCGTG