Insertion junction: CLIP2.035640_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035640
Chromosome:chromosome 6
Location:2920176
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g273100 (1 of 3) PF03067 - Chitin binding domain (Chitin_bind_3) 3'UTR
Cre06.g273150 RRM4 (1 of 2) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase; Putative ribosomal RNA methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATTAATATAAGTATCAACGCATTGAAGCGACGAGAATTTCGAGGCGAG
Internal bar code:TCTTTATTGTATGGGTCGCCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1997
LEAP-Seq percent confirming:96.3636
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCCGCGAGTTTGTATTCG
Suggested primer 2:CCCGTCCTTCTTGGCATCTT