Insertion junction: CLIP2.035660_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.035660
Chromosome:chromosome 6
Location:2601191
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00026443

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGGCGCAGGCAGGCAGTGACGTTGCCGGGAGTCACGGACGCGGGGCGGG
Internal bar code:GGTGACTGTTTCCGGGATGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1718
LEAP-Seq percent confirming:93.8775
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:CAAGGCAGGTTGGCAAAGTC
Suggested primer 2:GCCCTGTTCTGCATCTCAGT