Insertion junction: CLIP2.035727_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.035727
Chromosome:chromosome 2
Location:3768221
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g100800 (1 of 1) PTHR22847//PTHR22847:SF410 - WD40 REPEAT PROTEIN // WD REPEAT-CONTAINING PROTEIN 27 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACACAGTTGCAGGCACGCGGGGGAGCGCCGCACCGCCCCGGATGCAC
Internal bar code:TTTGCCAACGCATATCGTAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:285
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGTGTCATGGCCTCATTG
Suggested primer 2:TAGCTCGTTGGAATGTGCGT