Insertion junction: CLIP2.035742_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035742
Chromosome:chromosome 13
Location:3893256
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g589800 (1 of 4) PTHR10110//PTHR10110:SF119 - SODIUM/HYDROGEN EXCHANGER // SODIUM/HYDROGEN EXCHANGER 5-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCTGAATTAGGATGGCCACCGACGCCGGTGCGTGCTCCGCCGCAACTG
Internal bar code:GTCCAGCCTTCATTCTCTTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:997
LEAP-Seq percent confirming:58.6207
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCGACACATGTACTGAAC
Suggested primer 2:TCCTACGAACAGGCCGAGTA