Insertion junction: CLIP2.035791_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.035791
Chromosome:chromosome 12
Location:3126730
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00075855

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGCCAAAATGCCCTTACACGAAACGGGTCTTTTTACTTCTGACTTGCC
Internal bar code:GGTCTCTGGTATAACGCGCTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2412
LEAP-Seq percent confirming:61.7021
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTAACCCGCAGCTAACAA
Suggested primer 2:CACGCCGATGCATTGAGAAG