Insertion junction: CLIP2.035836_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.035836
Chromosome:chromosome 3
Location:3461214
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g167000 CrUBC3,CreSCE1b,CrUbcE2_2,SCE2,UBC3 (1 of 3) K10577 - ubiquitin-conjugating enzyme E2 I (UBE2I, UBC9); SUMO-conjugating enzyme intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGGTCTGATGGCGTCGCACGCGCACCATAGTGTATCTGGCCCATACAG
Internal bar code:TTTTGACAATGAATCACCGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1093
LEAP-Seq percent confirming:86.9565
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:AGAACTCGAACTCGCTTGCA
Suggested primer 2:TCCGTGAGTAGCCCCATGTA