Insertion junction: CLIP2.035875_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.035875
Chromosome:chromosome 12
Location:9645321
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre12.g801499 3'UTR
Cre35.g759447 (1 of 781) IPR000104 - Antifreeze protein, type I 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCACGGCATGCACGTCGGTTACTCCAAGCATTCAAGAGCGAGCGCACTA
Internal bar code:GTCAATCTGACCGCTGTGTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:485
LEAP-Seq percent confirming:80.4878
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGAGAGACGTACAGGGGA
Suggested primer 2:CTGTTGCTGTTGCTGTTGCT