Insertion junction: CLIP2.036056_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036056
Chromosome:chromosome 9
Location:5473522
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g408851 (1 of 2) 3.4.11.9 - Xaa-Pro aminopeptidase / X-Pro aminopeptidase intron
lncRNA_TCONS_00156494 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTACGTGGGGTTCAGGGCACGTGGGGGTTCAGGGCACGTGGGGTTCAG
Internal bar code:AGTAATCGCTCCATAGCGGTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:989
LEAP-Seq percent confirming:36.8421
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTTGAACTGCGAACCCAC
Suggested primer 2:TATCACAACGCCACACTGCT