Insertion junction: CLIP2.036083_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.036083
Chromosome:chromosome 10
Location:219217
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801097 (1 of 48) IPR011050 - Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCATTGACCCCTCCCTCGACCCCTCCCGCAGACCTTGGCCGCCAATGG
Internal bar code:CCAGGTAGGTCTCCGGTTTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1622
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GTTCACCATACACGCATCGC
Suggested primer 2:TGACCTTGACTCTCCTCGGT