Insertion junction: CLIP2.036093_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036093
Chromosome:chromosome 3
Location:6001518
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189605 (1 of 1) K15176 - RNA polymerase-associated protein CTR9 (CTR9) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGGGGCTGTTATCCACAACCCCCCACCGCCCCGCTCACCCTCCGGCTG
Internal bar code:GCAAGGAAAGACAACGTTGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:546
LEAP-Seq percent confirming:52.5
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:AATTACACACGCACACGCAC
Suggested primer 2:ACGCTCACCACGTGTATTGT