Insertion junction: CLIP2.036189_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036189
Chromosome:chromosome 15
Location:371511
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00212865

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGGTCTATCTTGGTGCCTGTCTCCGCCGGAACCTGGATTTGTGCTCCC
Internal bar code:AGTGCTCTAAGTTATCCTGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1187
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGGTCATCTACGGATGC
Suggested primer 2:GCTATCACGCTGTGCCATTG