Insertion junction: CLIP2.036206_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.036206
Chromosome:chromosome 11
Location:586114
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467608 (1 of 4) IPR003882//IPR008752 - Pistil-specific extensin-like protein // Peptidase M11, gametolysin intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGCTCGTAAAGCGCAGTTGACTTCTAGGCAGTCGGGCCGTTCGGCGTT
Internal bar code:AAATGTAGGGCATCTACGATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1230
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACCGGTGACACGTACAG
Suggested primer 2:CCACACTTGCCTTCACTTGC