Insertion junction: CLIP2.036282_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036282
Chromosome:chromosome 11
Location:3793807
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g479350 (1 of 3) PTHR31563//PTHR31563:SF1 - FAMILY NOT NAMED // ION CHANNEL POLLUX-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCGGCGGCAACGGTTCAAGATGGGGTTTCAGGCATGGGGGGGGGAGAC
Internal bar code:ACAAATTAAGCTGAAATCAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1223
LEAP-Seq percent confirming:84.6154
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAAGCTGAAAGGGACGGA
Suggested primer 2:CTGTTCAGGAGGTTGGGGTC