Insertion junction: CLIP2.036431_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036431
Chromosome:chromosome 12
Location:5639660
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00112996

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGCCGCCACTCTCGGCTGCCTCCGGGCATGCGTTCACCGCTGCCCTGC
Internal bar code:ATATTGAAGGAATACTTCAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:620
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GGACACTACTTGGCACCGAA
Suggested primer 2:TTGTCGTCCACTACAAGGGC