Insertion junction: CLIP2.036467_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036467
Chromosome:chromosome 16
Location:3899144
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g689100 PUS6 (1 of 2) 5.4.99.23 - 23S rRNA pseudouridine(1911/1915/1917) synthase; RNA pseudouridine synthase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTGTGCGCTGTGAAGGCACGCGTGCTGTCATTGCGCGCCTGGTGCCTC
Internal bar code:ACAGGAACGTGCAGGTCGTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:1358
LEAP-Seq percent confirming:95.2381
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GGACACTGCTTGAACTCGGA
Suggested primer 2:ACAGGGTCGCCGGTATTTTT