Insertion junction: CLIP2.036543_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.036543
Chromosome:chromosome 3
Location:4003919
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g171650 HEL16 (1 of 2) PTHR18934:SF145 - ATP-DEPENDENT RNA HELICASE DHX57-RELATED; DEAD/DEAH box helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTAATGTTTTCCTTGTGCTCTTTAACACACTCCCGTTCTCCCGTGTGCC
Internal bar code:GATATTGTAGATCTTAAACGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:65
LEAP-Seq percent confirming:2.27273
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:43
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:GTACCCTCCGTCATCCCTCT
Suggested primer 2:ATGTGTGCAGAGACCCCTTG