Insertion junction: CLIP2.036616_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.036616
Chromosome:chromosome 1
Location:3309477
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021300 (1 of 2) IPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCACCCGTATGGTCCCATGCAACCGCTCTCAGCTGCTCACAACCGCTC
Internal bar code:CGGTCAGTGCACAGGGCCGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2285
LEAP-Seq percent confirming:86.1111
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGCGGCCTAACAACTAA
Suggested primer 2:CGCGTGTGTGTAACTGTGTG