Insertion junction: CLIP2.036741_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.036741
Chromosome:chromosome 6
Location:4665681
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278550 (1 of 3) PTHR12385//PTHR12385:SF44 - CTL TRANSPORTER // PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAAGGCAACGCGCCATCACCGTTCCCGTCCCCTGCCCCTTGCACCTTTC
Internal bar code:ACCACACGCAGGTGTTCCCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2083
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TACAGCCTGCTGATCCTCCT
Suggested primer 2:CACCATCGTTAATGCTGGCG