Insertion junction: CLIP2.036812_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.036812
Chromosome:chromosome 9
Location:3451729
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00132499

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTTGCGCCTAGAACAGACGACCACTCAGGTGTATTGGGGCTCGCGCTGA
Internal bar code:CAAACGTCCGTTTGCCGCAAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3706
LEAP-Seq percent confirming:95.2703
LEAP-Seq n confirming:141
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:148

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCTGAGCACAAACCAACC
Suggested primer 2:AGCTGGCTCTGAACACCATC