Insertion junction: CLIP2.036844_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.036844
Chromosome:chromosome 14
Location:2638817
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g625400 RPT1 (1 of 1) K03061 - 26S proteasome regulatory subunit T1 (PSMC2, RPT1); 26S proteasome regulatory subunit intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTCCACAATGCTTTGCTGCGGCACCTAGCGCGCGCGTGTGCCCTAACA
Internal bar code:TCACTGGAACAACTGGGAATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:483
LEAP-Seq percent confirming:5.55556
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCGTCTCCTCAACCTGT
Suggested primer 2:ATCTGCTTGTCCGACACCAG