Insertion junction: CLIP2.037006_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.037006
Chromosome:chromosome 4
Location:2438814
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g221650 TOP4 (1 of 1) PTHR10169//PTHR10169:SF48 - DNA TOPOISOMERASE/GYRASE // DNA GYRASE SUBUNIT A, CHLOROPLASTIC/MITOCHONDRIAL-RELATED; Topoisomerase type IV intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGGTAATGACACACTCCATAACATAACAAACACATCACACATAAAAAG
Internal bar code:ACGGGCCAGAATAACGCCTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1377
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTGTGGGTGAGAATGTCA
Suggested primer 2:GCCCTGCCCAGTACAAATCT